Web Application

Additionally to the python package, pyXLMS features an easy-to-use web app that offers most of the functionality of the python package. The web app can either be accessed using our public server or run locally or self-hosted.

Public Web App

Our web app is publicly accessible for free via hgb-bin-proteomics.github.io/pyXLMS-app . No data is saved and any analysis only persists as long as your session is active in your browser!

You can read more about our publicly hosted instance here: github.com/hgb-bin-proteomics/pyXLMS-app .

Running Locally or Self-Hosting

Additionally, the web application can also be run locally or self-hosted. This is the preferred way if you are analyzing large amounts of data or sensitive data. You can run the web app locally or self-hosted via:

Cloning the pyXLMS GitHub repository :


git clone https://github.com/hgb-bin-proteomics/pyXLMS.git`

```
cd pyXLMS
```

[Recommended] Running the streamlit app via uv locally:

```
cd gui
```
```
pip install uv
```


uv run -- streamlit run streamlit_app.py

or running the streamlit app natively locally:

```
cd gui
```
```
pip install -r requirements.txt
```
```
streamlit run streamlit_app.py
```

or running via Docker by building the image yourself:

```
docker build . -f Dockerfile -t pyxlms
```
```
docker run -p 8501:8501 pyxlms
```

or by pulling the provided image from Docker Hub:


docker run -p 8501:8501 michabirklbauer/pyxlms:latest